Your question about your FT4 and FT3 levels dropping made me do some searching. I thought I remembered seeing this info previously and it made me wonder if your BHRT might be a contributor.
"When estrogen levels are high, the liver produces high levels of thyroid-binding globulin (TBG), a protein that binds to thyroid hormones in the blood and prevents them from being taken up by the cells." As I understand this, it is not the level of estrogen alone, but the ratio of progesterone to estrogen that is important. Do you think this could account for your Free thyroid hormone levels diminishing?
The most important question for a hypothyroid patient is always, How do you feel? If you feel well, then your levels are adequate. If you don't feel your best, then your levels are a bit lower than needed. Since your FT4/FT3 numbers have dropped over the last two years, why is the doctor reluctant to increase your dosage. Dosage is irrelevant, only the physiological effects are important. Seems the doctor should be wiling to get your FT4/FT3 back to prior levels.
Also your D is a bit lower than recommended, which is 50 minimum. Your B12 is adequate, but your ferritin should be at least 100.
Have you ever been tested for cortisol?