We moved your question to colon cancer because you'd already posted in anal cancer with no response, and because this question is really not best served here in the STI forum.
I know it's an HPV question, but you really should be asking your doctor these questions. I would hate to give you the wrong answer. We are not able to tell you what the doctor or pathologist will do, and that will be based on your specific findings.
I did get your question moved to Anal Cancer, though. That's more appropriate.