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Clindamycin for bacteria in tonsils?

So I caught a bacteria on my throat last month and was prescribed with Amoxicillin. It got rid of the infection, but then right after my tonsils from inside my throat was swollen and was taking Prednisone. It went away. I felt better and now I have it again. A bacteria on my tonsils and I found out I am getting it from my filthy fan. This time the doctor gave me Clindamycin. Which I am sceptical because when I took Amoxicillin it was 1 a day pill for a week and as soon as i took it the bacteria was going away. Now I've taken Clindamycin like 5 times, because it's 1 pill ever 6 hours. There is 28 pills in total. But I don't see the bacteria fading, like the Amoxicillin.
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