No, I'd say just start fresh as soon as you have a negative pregnancy test. If you get your period while on the pills, just keep taking them as normal. It will eventually even out. And if it doesn't, talk to your doctor.
Thanks for your input should I wait until I get my period to start taking it again? It's been 2-3 weeks since I stopped and I stopped half way threw the pack.
Going off of birth control or missing some can often mess with your hormones. I suggest first taking a pregnancy test just to be sure and if it's negative, continue taking your pills as normal. Things should work themselves out eventually.